SPM
This will cover:
Overview of the statistical theory underlying SPM

Introduction to spatial pre-processing of fMRI data

Practical introduction to experimental design

Practical analysis of fMRI data

EEG/MEG source localisation

Functional integration and Dynamic Causal Modelling for fMRI and ERP

MATLAB for Cognitive Neuroscience 2006-07

Session 1 & 2 - Presented by Ash Ranpura

Basic programming skills, debugging and matlab user interface

Variable types, matrices, cell arrays and structures

Demonstration files:

View demo1.m | ar_doubleplus.m | notation.m | quote.m

Download (demo1.m ) (ar_doubleplus.m ) (notation.m ) (quote.m ) - Right click on the icons.

Session 3 & 4 - Presented by Christian Ruff

Data analysis and visualisation

Using Cogent for standard psychological & fMRI experiments: data input, experimental control, timing, and data output; synchronise with fMRI

Demonstration files for Session 3:

View Data Analysis (Powerpoint) | data_analysis.m

Download (analysis.m ) - Right click on the icon.

Demonstration files for Session 4:

View Cogent (Powerpoint) | test_exp.m

Download test_experiment.zip (including test_exp.m and associated data files)

Visual stimulus generation

Graphics using Cogent: images; sprites; animation

Demonstration files for Sessions 5 & 6:

View Visual stimulus generation (Powerpoint) | example1.m | example2.m | example3.m | example 4.m | example5.m | testflip.m | clock_sprites.m | lineMotion.m | wordList.txt

Download Visual stimulus generation (Powerpoint) | (example1.m ) (example2.m ) (example3.m ) (example 4.m ) (example5.m ) (testflip.m ) (clock_sprites.m ) (lineMotion.m ) (wordList.txt) - Right click on the icons.

Psychophysical methods: contrast, gamma, visual angle, curve fitting

Demonstration files:

View gabor_tutorial.m | gaborFn.m | gabor_cogentDemo_gabor.m | gabor_cogentDemo2_speedDiscriminationGabor.m | gabor_cogentDemo_plaid.m | generateGaborMovie.m | generatePlaidMovie.m

Download (gabor_tutorial.m ) (gaborFn.m ) (gabor_cogentDemo_gabor.m ) (gabor_cogentDemo2_speedDiscriminationGabor.m ) (gabor_cogentDemo_plaid.m) (generateGaborMovie.m ) (generatePlaidMovie.m ) - Right click on the icons.

Psychophysical methods 2: contrast, gamma, visual angle, data processing

Demonstration files:

View calibDisplay.m | cgGammaDemo_directColour.m | cgScaleDemo.m | makeAnaglphDemo.m | psychophysicsTricks.m | visang.m

Download (calibDisplay.m ) (cgGammaDemo_directColour.m ) (cgScaleDemo.m ) (makeAnaglphDemo.m ) (psychophysicsTricks.m ) (visang.m ) - Right click on the icons.

Multivariate Pattern Recognition for 'decoding' brain states in fMRI

Demonstration files:

View extract_timecourse_from_voxelsMOTION_presentation.m | filsubjectnumbersMOTION.m | lin_discrim_multiple_subjectsMOTION_presentation.m | make_stats_lin_discrimMOTION.m

Download (extract_timecourse_from_voxelsMOTION_presentation.m ) (filsubjectnumbersMOTION.m ) (lin_discrim_multiple_subjectsMOTION_presentation.m ) (make_stats_lin_discrimMOTION.m ) - Right click on the icons.

Graphing in Matlab

Demonstration files:

View graphs (Powerpoint) | graphs.m

Download (graphs.ppt) (graphs.m ) - Right click on the icons

Control of external devices with Matlab/Cogent

Demonstration files:

View ExternalDevices_Cogent (Powerpoint) | Eyetracker_demo.m | jumping_cross.m | Stimuluscheck.m | voiceRT.m

Download (ExternalDevices_Cogent.ppt) (Eyetracker_demo.m ) (jumping_cross.m ) (Stimuluscheck.m ) (voiceRT.m ) - Right click on the icons

Introduction to create, play, and edit sounds in Matlab

Demonstration files:

View Sound in Matlab (Powerpoint) | a_sound.m | a_sound_wind.m | am_fm_sine.m | am_noise.m | am_sine.m | fixed_noise.m | fm_sine.m | harmoic.m | playsound_Cognet.m | playsound_Matlab.m | sound_amplitude.m | sound_ampmod.m | sound_create.m | sound_noise.m | sound_scale.m | sound_sequence.m | sound_square.m | sound_sweep.m | sound_wind.m | wind.m

Download (Sound in Matlab.ppt) (a_sound.m ) (a_sound_wind.m ) (am_fm_sine.m ) (am_noise.m ) (am_sine.m ) (fixed_noise.m ) (fm_sine.m ) (harmoic.m ) (playsound_Cogent.m ) (playsound_Matlab.m ) (sound_amplitude.m ) (sound_ampmod.m ) (sound_create.m ) (sound_noise.m ) (sound_scale.m ) (sound_sequence.m ) (sound_square.m ) (sound_sweep.m ) (sound_wind.m ) (wind.m ) - Right click on the icons

Analyses of EEG/MEG signals with wavelets

Demonstration files:

View Matlab course wavelets (Powerpoint)

Download (Matlab course wavelets.ppt) (wavelet_tutorial.m ) - Right click on the icons

An introduction to batching in SPM5, covering pre-processing and model specification/estimation

Demonstration files:

View firstLevel_exp.m | secondLevel_exp.m | prePro_exp.m | prePro_exp_normalize.m

Download (firstLevel_exp.m ) (secondLevel_exp.m ) (prePro_exp.m ) (prePro_exp_normalize.m ) - Right click on the icons

This page last modified 19 October, 2007 by ICN WEB Team